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Journal of Proteomics

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Comparative quantitative proteomics of tumoral and peritumoral tissues for distinguishing human glioblastoma from low-grade astrocytoma

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Zhigang Xiong, Chaoxi Li, Qiangqiang Han, Yanting Su, Liming Cheng, Hao-Long Zeng

Differences between protein cargo in outer membrane vesicles released from Mannheimia haemolytica A2 in the presence and absence of bovine lactoferrin

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Christian Avalos-Gómez, Mario Alejandro Aguilar-Chaparro, Emmanuel Ríos-Castro, Ernesto Marin-Flamand, Ana Elvia Sánchez-Mendoza, Mireya de la Garza

Comparative performance of Scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Andrew T. Rajczewski, Subina Mehta, Reid Wagner, Wassim Gabriel, James Johnson, Katherine Do, Simina Vintila, Mathias Wilhelm, Manuel Kleiner, Brian C. Searle, Timothy J. Griffin, Pratik D. Jagtap

Proteomic exploration of the recently Re-classified forest cobra Naja species and the potential cytotoxic activity in cancer cell lines

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Phetolo Motsa, Beric Muller, Lesetja R. Motadi, Benedict C. Offor, Lizelle A. Piater

Enhancing glycopeptide annotation and glycan localization using electron activated dissociation through a multiplexed parallel reaction monitoring design of experiments

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Hiba Salim, Ruben Almey, Laura Pont, Fernando Benavente, Maarten Dhaenens, Estela Giménez

SequenceAssembler: A tool for protein sequence assembly from mass spectrometry data

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Celso Vitor A.Q. Calomeno, Hulyana Brum, Rodrigo S.C. Brant, Marlon D.M. Santos, Luis Miguel Muñoz-Gómez, Ana Gisele da Costa Neves-Ferreira, Richard Hemmi Valente, Michel Batista, Paulo C. Carvalho

Antiobesogenic effect of hydrolysates and peptide fractions of porcine collagen after in vitro gastrointestinal digestion

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Julio A. González-Noriega, Martín Valenzuela-Melendres, Adrián Hernández-Mendoza, Humberto Astiazarán-García, Thalia Islava-Lagarda, Orlando Tortoledo-Ortiz, Ana L. De La Garza-Hernández, Samaria L. Gutierrez-Pacheco, Andrés Alvarez-Armenta, Emmanuel Ríos-Castro, José A. Huerta-Ocampo, E. Aída Peña-Ramos

Integration of proteomic and transcriptomic data of the venom and venom gland from Tityus jaimei

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Ana Escobar, Marcos H. Salazar, Magdalena Hernández-Ortiz, Herlinda Clement, Sergio Encarnación-Guevara, John Cleghorn, Hildaura Acosta, Gerardo Corzo

Extruded Limnospira platensis with enzyme supplementation shifts the broiler muscle proteome toward enhanced energy metabolism pathways

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Maria Pinheiro Spínola, Dina Rešetar Maslov, Ivana Rubić, Mónica Mendes da Costa, Vladimir Mrljak, Madalena Lordelo, André Martinho de Almeida, José António Mestre Prates

Interspecific and intraspecific variability in venom composition of Naja naja and Naja kaouthia (Reptilia: Elapidae) populations from different habitats in Bangladesh

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Mohammad Abdul Wahed Chowdhury, Johannes Müller, Ibrahim Khalil Al Haidar, Md. Mizanur Rahman, Mohammed Noman, Aniruddha Ghose, Abdullah Abu Sayeed, Robed Amin, Libia Sanz, Mohammad Abul Faiz, Ulrich Kuch, Juan J. Calvete

Molecular signature of early obesity-associated insulin resistance: Adipocyte-derived extracellular vesicle proteins reveal stage-specific candidates for metabolic dysfunction

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Jaime Delgadillo-Velázquez, Esaú Bojórquez-Velázquez, Eliel Ruiz-May, Elizabeth Carvajal-Millan, Magdalena Aguirre-García, Efraín Alday-Noriega, José Ángel Huerta-Ocampo, Humberto Astiazaran-Garcia

Comparative proteomic analysis of residual proteins in waterlogged ancient leather

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Lijie Tang, Hailiang Yang, Zhijiang Wu, Liping Bao, Yang Zhou, Huabing Wang

Anisomelic acid promotes proteasomal degradation of HPV16 E6 via E3 ligase recruitment: A mass spectrometry-based interactome study

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Michael Santos Silva, Leila S. Coelho-Rato, Navid Delshad, Tatiana Tarkhova, Joakim Edman, Preethy Paul, Annika Meinander, John E. Eriksson

Structural dynamics of the TPS/TPP complex in Saccharomyces cerevisiae: Insights from cross-linking mass spectrometry and computational modeling

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Renata M. Santos, Viviane A. Bastos, Felipe F.M. Bagatelli, Richard H. Valente, Louise U. Kurt, Diogo B. Lima, Carla C. Oliveira, Fabio C.S. Nogueira, Elis C.A. Eleutherio, Paulo C. Carvalho, Francisco Gomes-Neto

Potential protein biomarkers for heat tolerance in wheat at seedling and ear peep stages

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Agyeya Pratap, Kadambot H.M. Siddique, Nicolas L. Taylor

Peroxiredoxin 6 (Prdx6) and oxidative stress in post-mortem beef tenderization: A proteomic perspective

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Huixin Zuo, Linlin Huang, Mingming Huang, Xiao Ma, Chongxian Zheng, Benjamin W.B. Holman, Yimin Zhang, Xin Luo, Yanwei Mao

Two decades of the Mexican Proteomics Society: the history and evolution of proteomics and metabolomics in Mexico

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): José Ángel Huerta-Ocampo, Robert Winkler, Aldo Moreno-Ulloa, Sergio Encarnación-Guevara

Advancing post-genomics research in Mexico: Opportunities and strategies for the next decade

Publication date: 6 January 2026

Source: Journal of Proteomics, Volume 322

Author(s): Robert Winkler, Aldo Moreno-Ulloa

Proteoformics: Current status and future perspectives

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Zheng Fang, Yanjun Zhang, Xiaoxia Feng, Na Li, Liang Chen, Xianquan Zhan

Q2C: A software for managing mass spectrometry facilities

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Diogo B. Lima, Max Ruwolt, Marlon D.M. Santos, Ke Pu, Fan Liu, Paulo C. Carvalho

Proteomics analysis reveal early event molecular effectors of anti-CD19 CAR-T cell therapy in hematological cancer

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): John Oluwafemi Teibo, Roberta Maraninchi Silveira, Virginia Campos Silvestrini, Izadora Archiolli, Ana Paula Masson, Beatriz Pereira de Morais, Dayane Schmidt, Matheus Henrique dos Santos, Germano Aguiar Ferreira, Carolina Hassibe Thomé, Dominic Helm, Raja Sekhar Nirujogi, Dairo Renato Alessi, Virginia Picanço-Castro, Lucas Eduardo Botelho de Souza, Vitor Marcel Faça

Redox proteomics workflow to unveil extracellular targets of oxidation in vascular endothelial cells

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Danielle Fernandes Vileigas, Railmara Pereira da Silva, Bianca Dempsey, Mariana Pereira Massafera, Mikaela Peglow Pinz, Flavia Carla Meotti

Potential kidney biomarkers in urinary extracellular vesicles from end stage renal disease and post-transplant patients

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Maritza G. Verdugo-Molinares, Marco Ku-Centurion, Laura Cortes-Sanabria, Yadira O. Lugo-Melchor, Emilie Pinault, Luis Evangelista, Cesar O. Ramos-Garcia, Pierre Marquet, Zesergio Melo

Proteomic and transcriptomic analyses reveal new insights into allergens in Ligustrum lucidum pollen

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Juan Carlos Vizuet-de-Rueda, Josaphat M. Montero-Vargas, Alberto C. López-Calleja, María Z.T. Manríquez-Ventura, Luis M. Teran

Off-site processing of data-dependent and data-independent acquisition shotgun proteomics data with MASSyPupX

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Jorge Noé García-Chávez, Robert Winkler

Quantitative proteomic analysis of the Toxoplasma gondii cytoskeleton and bioinformatic identification of highly antigenic proteins

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Karina Araujo-Ruiz, Daniel Ignacio López-Flores, María Karla Martínez-Muné, Brenda Yomara García-Sánchez, Carlos J. Ramírez-Flores, Francisco Ernesto Sandoval-Rodríguez, Emmanuel Ríos-Castro, Mónica Edith Mondragón-Castelán, Sirenia González-Pozos, Ricardo Mondragón-Flores

Expanding the landscape of lysine acetylation stoichiometry and clinical impact

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Sergio Encarnación-Guevara, Jeovanis Gil

Sequence-driven species identification of ZooMS collagen peptide mass fingerprints

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Toby Lawrence, Michael Buckley

Mining the plasma proteome: Evaluation of enrichment methods for depth and reproducibility

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): K. Roger, I. Metatla, S. Ceccacci, K. Wahbi, L. Motté, C. Chhuon, I.C. Guerrera

Global profiling of protein lysine Malonylation during goat intramuscular Preadipocyte differentiation

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Changheng Yang, Haiyang Li, Zijun Xu, Yaqiu Lin, Yong Wang, Lian Huang, Hua Xiang, Jiangjiang Zhu

Proteomics reveals the role of the EamB transporter from Aeromonas hydrophila LP-2 in biofilm formation

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Qiaozhen Xu, Feng Tian, Xinyun Wang, Juanqi Lian, Xiaowei Zhang, Xiangmin Lin, Yanling Liu

E cadherin appears to be an essential on/off switch for initiating bile canaliculi formation

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s): Mireille Chevallet, Thierry Rabilloud, Hélène Diemer, Fabrice Bertile, Alexandra Fuchs, Aurélien Deniaud

Editorial Board

Publication date: 30 October 2025

Source: Journal of Proteomics, Volume 321

Author(s):

Hypersensitivity and L-Asparaginase: A structural analysis of the interaction with HLA-DRB1*07:01

Publication date: Available online 17 October 2025

Source: Journal of Proteomics

Author(s): Jhenifer Yonara de Lima, Emanuella de Castro Andreassa, Marlon Dias Mariano Santos, Paulo Costa Carvalho, Tatiana de Arruda Campos Brasil de Souza