Controlled vocabularies: Difference between revisions
From Mass Spec Terms
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==Projects== | ==Projects== | ||
*[https://bioportal.bioontology.org/ontologies/MS/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_0000000#details Proteomics Standards Initiative Mass Spectrometry Vocabularies] | *[https://bioportal.bioontology.org/ontologies/MS/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FMS_0000000#details Proteomics Standards Initiative Mass Spectrometry Vocabularies] | ||
*[https://sourceforge.net/projects/psidev/ Proteomics Standards Initiative Sourceforge] | *[https://sourceforge.net/projects/psidev/ Proteomics Standards Initiative Sourceforge] | ||
*[https://www.ms-imaging.org/imzml/controlled-vocabulary/ MS Imaging Controlled Vocabulary] | |||
==Publications== | ==Publications== | ||
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*[{{doi}}10.1186/1471-2105-16-S7-S2 Current controlled vocabularies are insufficient to uniquely map molecular entities to mass spectrometry signal] | *[{{doi}}10.1186/1471-2105-16-S7-S2 Current controlled vocabularies are insufficient to uniquely map molecular entities to mass spectrometry signal] | ||
*[{{doi}}10.1093/database/bat009 The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary] | *[{{doi}}10.1093/database/bat009 The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary] | ||
*[{{doi}}10.1074/mcp.R112.019695 File Formats Commonly Used in Mass Spectrometry Proteomics] | |||
*[{{doi}}10.1002/mas.21522 The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5] | |||
*[{{doi}}10.1021/acs.jproteome.0c00192 mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements] | |||
*[{{doi}}10.1186/s12859-021-04490-0 Aird: a computation-oriented mass spectrometry data format enables a higher compression ratio and less decoding time] | |||
==See also== | ==See also== | ||
Latest revision as of 11:41, 31 July 2024
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Projects
- Proteomics Standards Initiative Mass Spectrometry Vocabularies
- Proteomics Standards Initiative Sourceforge
- MS Imaging Controlled Vocabulary
Publications
- imzML: Imaging Mass Spectrometry Markup Language: A common data format for mass spectrometry imaging
- Current controlled vocabularies are insufficient to uniquely map molecular entities to mass spectrometry signal
- The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary
- File Formats Commonly Used in Mass Spectrometry Proteomics
- The arc of Mass Spectrometry Exchange Formats is long, but it bends toward HDF5
- mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements
- Aird: a computation-oriented mass spectrometry data format enables a higher compression ratio and less decoding time
