Proteomics Standards Initiative: Difference between revisions
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==Top level terms and selected core terms== | |||
*[[ambiguous residues]] | |||
*[[binary data array]] | |||
*[[binary data compression type]] | |||
*[[binary data type]] | |||
*[[chemical compound]] | |||
*[[chemical compound attribute]] | |||
*[[chemical compound formula]] | |||
*[[chromatogram type]] | |||
*[[Cleavage agent regular expression]] | |||
*[[data file checksum type]] | |||
*[[data file content]] | |||
*[[data processing parameter]] | |||
*[[data transformation]] | |||
*[[detector acquisition mode]] | |||
*[[detector attribute]] | |||
*[[detector type]] | |||
*[[dissociation method]] | |||
*[[external reference identifier]] | |||
*[[file format]] | |||
*[[inlet type]] | |||
*[[instrument model]] | |||
*[[ion attribute]] | |||
*[[ion chemical type]] | |||
*[[ion optics]] | |||
*[[ion reaction]] | |||
*[[ion role]] | |||
*[[ionization type]] | |||
*[[laser attribute]] | |||
*[[laser type]] | |||
*[[m/z Separation Method]] | |||
*[[MALDI matrix application]] | |||
*[[mass analyzer attribute]] | |||
*[[mass analyzer type]] | |||
*[[mass spectrometry]] | |||
*[[mass table options]] | |||
*[[matrix application type]] | |||
*[[measurement method]] | |||
*[[modification parameters]] | |||
*[[native spectrum identifier format]] | |||
*[[object attribute]] | |||
*[[peak]] | |||
*[[peptide attribute]] | |||
*[[peptide modification details]] | |||
*[[polarity]] | |||
*[[precursor activation attribute]] | |||
*[[prefix]] | |||
*[[protein attribute]] | |||
*[[purgatory]] | |||
*[[quantification data processing]] | |||
*[[quantification information]] | |||
*[[resolution type]] | |||
*[[retention time window attribute]] | |||
*[[scan direction]] | |||
*[[Scan Function]] | |||
*[[scan law]] | |||
*[[scan polarity]] | |||
*[[scanning method]] | |||
*[[search input details]] | |||
*[[sequential m/z separation method]] | |||
*[[software]] | |||
*[[source attribute]] | |||
*[[spectra combination]] | |||
*[[spectrum identification result details]] | |||
*[[spectrum representation]] | |||
*[[spectrum type]] | |||
*[[standard]] | |||
*[[target inclusion exclusion priority]] | |||
*[[transition validation method]] | |||
*[[unit]] | |||
*[[unit]] | |||
{{ext}}10.1093/database/bat009 The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary | |||
*[http://www.psidev.info/ Proteomics Standards Inititative] | |||
*[http://www.psidev.info/groups/mass-spectrometry PSI-MS: Mass Spectrometry Standards Working Group] | |||
*[http://www.psidev.info/groups/controlled-vocabularies PSI Controlled Vocabularies] | |||
*[http://www.ontobee.org/ontology/MS Mass spectrometry ontology] | |||
*[{{doi}}10.1186/1471-2105-16-S7-S2 Current controlled vocabularies are insufficient to uniquely map molecular entities to mass spectrometry signal] | |||
*[{{doi}}10.1016/j.bbapap.2013.02.017 Controlled vocabularies and ontologies in proteomics: Overview, principles and practice] | |||
*[{{doi}}10.1021/acs.jproteome.2c00637 Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work] | |||
[[Category:PSI]] | |||
Latest revision as of 15:58, 12 March 2024
Top level terms and selected core terms
- ambiguous residues
- binary data array
- binary data compression type
- binary data type
- chemical compound
- chemical compound attribute
- chemical compound formula
- chromatogram type
- Cleavage agent regular expression
- data file checksum type
- data file content
- data processing parameter
- data transformation
- detector acquisition mode
- detector attribute
- detector type
- dissociation method
- external reference identifier
- file format
- inlet type
- instrument model
- ion attribute
- ion chemical type
- ion optics
- ion reaction
- ion role
- ionization type
- laser attribute
- laser type
- m/z Separation Method
- MALDI matrix application
- mass analyzer attribute
- mass analyzer type
- mass spectrometry
- mass table options
- matrix application type
- measurement method
- modification parameters
- native spectrum identifier format
- object attribute
- peak
- peptide attribute
- peptide modification details
- polarity
- precursor activation attribute
- prefix
- protein attribute
- purgatory
- quantification data processing
- quantification information
- resolution type
- retention time window attribute
- scan direction
- Scan Function
- scan law
- scan polarity
- scanning method
- search input details
- sequential m/z separation method
- software
- source attribute
- spectra combination
- spectrum identification result details
- spectrum representation
- spectrum type
- standard
- target inclusion exclusion priority
- transition validation method
- unit
- unit
External links
- http://dx.doi.org/10.1093/database/bat009 The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary
- Proteomics Standards Inititative
- PSI-MS: Mass Spectrometry Standards Working Group
- PSI Controlled Vocabularies
- Mass spectrometry ontology
- Current controlled vocabularies are insufficient to uniquely map molecular entities to mass spectrometry signal
- Controlled vocabularies and ontologies in proteomics: Overview, principles and practice
- Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work
